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Superresolution Microscopy Platform Lets Researchers 'Step Inside' Data

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A team from Carnegie Mellon University (CMU) and Benaroya Research Institute at Virginia Mason (BRI) is working to combine two techniques, expansion microscopy and virtual reality (VR), to create a method, via a platform called ExMicroVR, that will allow researchers to “step inside” biological data. By combining these techniques, the researchers will have the opportunity to enlarge, explore, and analyze cell structures beyond the limits of traditional microscopy.

Professor Yongxin (Leon) Zhao has been developing the expansion microscopy technique to physically magnify a biopsy, allowing researchers to see fine details in biological samples using standard microscopes.

Expansion microscopy works by making biopsy samples physically grow in size to overcome the  limitations of standard microscopes. The samples are chemically transformed into water-soluble hydrogels, which are then given a treatment that loosens the tissues, allowing the sample to expand more than 100× in volume. This allows researchers to overcome the diffraction limit without costly specialized microscopes.

One limit of the technology, however, is that it extracts two to three orders of magnitude more data than current techniques are capable of interpreting. To overcome this challenge, the team will turn to Tom Skillman, BRI’s former director of research technology, who founded a VR company called Immersive Science that specializes in scientific applications.

“Bringing all that data into VR not only allows the scientist to see their 2D microscope images in full 3D, but to interact with their data — selecting channels, adjusting their views, colors and contrast, and grabbing and rotating the images to quickly identify key aspects of the image that are coupled back to the disease under study,” Skillman said.

The eventual goal is for the VR tool to be shared on open platforms with other researchers. The platform is intended to be affordable and easily accessible. The development of the tool is funded by a $200,000 Grand Challenges grant from the Bill and Melinda Gates Foundation. 

 


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Published: June 2019
Glossary
superresolution
Superresolution refers to the enhancement or improvement of the spatial resolution beyond the conventional limits imposed by the diffraction of light. In the context of imaging, it is a set of techniques and algorithms that aim to achieve higher resolution images than what is traditionally possible using standard imaging systems. In conventional optical microscopy, the resolution is limited by the diffraction of light, a phenomenon described by Ernst Abbe's diffraction limit. This limit sets a...
virtual reality
Virtual reality (VR) is a computer-generated simulation of a three-dimensional environment or experience that can be interacted with and explored by an individual using electronic devices, such as a headset with a display. VR aims to create a sense of presence, immersing users in a computer-generated world that can be entirely fictional or a replication of the real world. It often involves the use of specialized hardware and software to provide a fully immersive and interactive experience. ...
expansion microscopysuperresolutionMicroscopyVRvirtual realityCarnegie MellonBenaroya Research InstituteVirginia MasonTech Pulse

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